STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ERCC8ERCC excision repair 8, CSA ubiquitin ligase complex subunit. (395 aa)    
Predicted Functional Partners:
DDB1
Damage specific DNA binding protein 1.
    
 0.999
ERCC6
ERCC excision repair 6, chromatin remodeling factor.
    
 0.992
RBX1
Ring-box 1.
    
 0.990
CUL4A
Cullin 4A.
    
 0.980
CUL4B
Cullin 4B.
    
 0.980
POLR2A
RNA polymerase II subunit A.
    
 0.977
ENSCABP00000011403
annotation not available
    
 
 0.973
RNF7
Ring finger protein 7.
    
 0.961
POLR2I
RNA polymerase II subunit I.
    
 0.955
ENSCABP00000002417
annotation not available
    
  0.951
Your Current Organism:
Chelonoidis abingdonii
NCBI taxonomy Id: 106734
Other names: Abingdon island giant tortoise, C. abingdonii, Chelonoidis nigra abingdonii, Geochelone nigra abigdonii, Geochelone nigra abingdoni, Geochelone nigra ephippium
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.