STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPTLC1Serine palmitoyltransferase long chain base subunit 1. (446 aa)    
Predicted Functional Partners:
SPTSSA
Serine palmitoyltransferase small subunit A.
    
 0.990
SPTLC3
Serine palmitoyltransferase long chain base subunit 3.
  
0.984
SPTLC2
Serine palmitoyltransferase long chain base subunit 2.
  
0.984
ISM1
Isthmin 1.
   
 0.982
ORMDL2
ORMDL sphingolipid biosynthesis regulator 2.
    
 0.977
ORMDL1
ORMDL sphingolipid biosynthesis regulator 1.
    
 0.977
ORMDL3
ORMDL sphingolipid biosynthesis regulator 3.
    
 0.977
KDSR
3-ketodihydrosphingosine reductase.
     
 0.922
EPRS1
glutamyl-prolyl-tRNA synthetase 1.
   
 0.920
MTOR
Mechanistic target of rapamycin kinase.
    
 0.916
Your Current Organism:
Chelonoidis abingdonii
NCBI taxonomy Id: 106734
Other names: Abingdon island giant tortoise, C. abingdonii, Chelonoidis nigra abingdonii, Geochelone nigra abigdonii, Geochelone nigra abingdoni, Geochelone nigra ephippium
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.