STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RNF141Ring finger protein 141. (230 aa)    
Predicted Functional Partners:
TRIP12
Thyroid hormone receptor interactor 12.
     
 0.801
CPSF2
Cleavage and polyadenylation specific factor 2.
   
 
  0.738
CPSF3
Cleavage and polyadenylation specific factor 3.
     
 0.732
ENSCABP00000006846
annotation not available
    
  0.639
ENSCABP00000018096
annotation not available
    
  0.639
FECH
Ferrochelatase.
   
    0.633
UBA3
Ubiquitin like modifier activating enzyme 3.
    
  0.561
ATG7
Autophagy related 7.
    
  0.561
ENSCABP00000020738
annotation not available
    
  0.507
ENSCABP00000023080
annotation not available
    
  0.507
Your Current Organism:
Chelonoidis abingdonii
NCBI taxonomy Id: 106734
Other names: Abingdon island giant tortoise, C. abingdonii, Chelonoidis nigra abingdonii, Geochelone nigra abigdonii, Geochelone nigra abingdoni, Geochelone nigra ephippium
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.