STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCABP00000004948annotation not available (251 aa)    
Predicted Functional Partners:
LUM
Lumican.
   
  0.797
ENSCABP00000004954
annotation not available
 
      0.791
SERPINH1
Serpin family H member 1.
    
 0.684
PLOD1
Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1.
   
 0.654
COL6A2
Collagen type VI alpha 2 chain.
   
 0.613
COL8A1
Collagen type VIII alpha 1 chain.
 
   
 0.607
PLOD2
Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2.
   
 0.589
ENSCABP00000028793
annotation not available
   
 0.589
P4HB
Prolyl 4-hydroxylase subunit beta.
    
  0.572
PDIA2
Protein disulfide isomerase family A member 2.
    
  0.572
Your Current Organism:
Chelonoidis abingdonii
NCBI taxonomy Id: 106734
Other names: Abingdon island giant tortoise, C. abingdonii, Chelonoidis nigra abingdonii, Geochelone nigra abigdonii, Geochelone nigra abingdoni, Geochelone nigra ephippium
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.