STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCABP00000005365annotation not available (303 aa)    
Predicted Functional Partners:
DERL1
Derlin 1.
    
 0.738
UBE2J2
Ubiquitin conjugating enzyme E2 J2.
    
 0.691
PEX6
Peroxisomal biogenesis factor 6.
   
  0.661
VCP
Valosin containing protein.
   
 0.596
C1QTNF12
C1q and TNF related 12.
    
 0.590
ENSCABP00000018328
annotation not available
    
  0.577
DERL2
Derlin 2.
    
 0.566
DERL3
Derlin 3.
    
 0.566
PSKH1
Protein serine kinase H1.
   
    0.533
SLBP
Stem-loop binding protein.
 
   
 0.499
Your Current Organism:
Chelonoidis abingdonii
NCBI taxonomy Id: 106734
Other names: Abingdon island giant tortoise, C. abingdonii, Chelonoidis nigra abingdonii, Geochelone nigra abigdonii, Geochelone nigra abingdoni, Geochelone nigra ephippium
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.