STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TTC36Tetratricopeptide repeat domain 36. (190 aa)    
Predicted Functional Partners:
HGD
Homogentisate 1,2-dioxygenase.
   
  
 0.851
HPD
4-hydroxyphenylpyruvate dioxygenase.
   
 
 0.768
FAH
Fumarylacetoacetate hydrolase.
   
  
 0.710
HPDL
4-hydroxyphenylpyruvate dioxygenase like.
   
 
 0.583
RNF138
Ring finger protein 138.
      
 0.561
SRCIN1
SRC kinase signaling inhibitor 1.
      
 0.515
HAAO
3-hydroxyanthranilate 3,4-dioxygenase.
   
  
 0.481
GCC2
GRIP and coiled-coil domain containing 2.
      
 0.449
ACMSD
Aminocarboxymuconate semialdehyde decarboxylase.
   
  
 0.439
Your Current Organism:
Chelonoidis abingdonii
NCBI taxonomy Id: 106734
Other names: Abingdon island giant tortoise, C. abingdonii, Chelonoidis nigra abingdonii, Geochelone nigra abigdonii, Geochelone nigra abingdoni, Geochelone nigra ephippium
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.