STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPEF1Sperm flagellar 1. (235 aa)    
Predicted Functional Partners:
PLA2G4A
Phospholipase A2 group IVA.
    
 0.696
ENSCABP00000004758
annotation not available
  
 0.665
ENSCABP00000007825
annotation not available
     
 0.610
SPEF2
Sperm flagellar 2.
    
 
 0.601
RHOT2
Ras homolog family member T2.
   
 0.594
RHOT1
Ras homolog family member T1.
   
 0.594
CASK
Calcium/calmodulin dependent serine protein kinase.
   
 0.575
RIPK4
Receptor interacting serine/threonine kinase 4.
    
 0.548
MAPRE1
Microtubule associated protein RP/EB family member 1.
   
 
 0.526
RXFP1
Relaxin family peptide receptor 1.
     
 0.518
Your Current Organism:
Chelonoidis abingdonii
NCBI taxonomy Id: 106734
Other names: Abingdon island giant tortoise, C. abingdonii, Chelonoidis nigra abingdonii, Geochelone nigra abigdonii, Geochelone nigra abingdoni, Geochelone nigra ephippium
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.