STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HOXC13Homeobox C13. (303 aa)    
Predicted Functional Partners:
FOXN1
Forkhead box N1.
   
 
 0.645
LEF1
Lymphoid enhancer binding factor 1.
    
 
 0.585
FOXN4
Forkhead box N4.
   
 
 0.499
PBX3
PBX homeobox 3.
    
 
 0.480
PBX2
PBX homeobox 2.
    
 
 0.480
ENSCABP00000025297
annotation not available
    
 
 0.480
ENSCABP00000025303
annotation not available
    
 
 0.480
PBX4
PBX homeobox 4.
    
 
 0.480
MSX2
Msh homeobox 2.
   
  
0.474
HOXC4
Homeobox C4.
   
 
0.444
Your Current Organism:
Chelonoidis abingdonii
NCBI taxonomy Id: 106734
Other names: Abingdon island giant tortoise, C. abingdonii, Chelonoidis nigra abingdonii, Geochelone nigra abigdonii, Geochelone nigra abingdoni, Geochelone nigra ephippium
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.