STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SUGP1SURP and G-patch domain containing 1. (625 aa)    
Predicted Functional Partners:
DHX15
DEAH-box helicase 15.
    
 0.996
RBM17
RNA binding motif protein 17.
   
 
 0.970
U2AF2
U2 small nuclear RNA auxiliary factor 2.
    
 
 0.962
RBM6
RNA binding motif protein 6.
   
 0.880
RBM5
RNA binding motif protein 5.
   
 0.880
ENSCABP00000024484
annotation not available
   
 0.880
SF1
Splicing factor 1.
   
 0.781
DQX1
DEAQ-box RNA dependent ATPase 1.
    
 0.756
DHX9
DExH-box helicase 9.
    
  0.748
RBM25
RNA binding motif protein 25.
   
 
 0.747
Your Current Organism:
Chelonoidis abingdonii
NCBI taxonomy Id: 106734
Other names: Abingdon island giant tortoise, C. abingdonii, Chelonoidis nigra abingdonii, Geochelone nigra abigdonii, Geochelone nigra abingdoni, Geochelone nigra ephippium
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.