STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCABP00000007074annotation not available (272 aa)    
Predicted Functional Partners:
C1QC
Complement C1q C chain.
    
  0.559
COL6A2
Collagen type VI alpha 2 chain.
   
 0.529
ITGA1
Integrin subunit alpha 1.
    
 0.520
ENSCABP00000003925
annotation not available
    
 0.516
ITGB5
Integrin subunit beta 5.
    
 0.516
ITGB4
Integrin subunit beta 4.
    
 0.515
ITGB6
Integrin subunit beta 6.
    
 0.515
MYSM1
Myb like, SWIRM and MPN domains 1.
    
 0.513
ITGAV
Integrin subunit alpha V.
    
 0.508
COL8A1
Collagen type VIII alpha 1 chain.
    
  0.500
Your Current Organism:
Chelonoidis abingdonii
NCBI taxonomy Id: 106734
Other names: Abingdon island giant tortoise, C. abingdonii, Chelonoidis nigra abingdonii, Geochelone nigra abigdonii, Geochelone nigra abingdoni, Geochelone nigra ephippium
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.