STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VPS9D1VPS9 domain containing 1. (602 aa)    
Predicted Functional Partners:
ENSCABP00000003264
annotation not available
      
 0.566
ASB3
Ankyrin repeat and SOCS box containing 3.
      
 0.566
ZNF276
Zinc finger protein 276.
      
 0.562
POLR3A
RNA polymerase III subunit A.
      
 0.550
CDHR3
Cadherin related family member 3.
      
 0.508
DND1
DND microRNA-mediated repression inhibitor 1.
      
 0.503
DBNDD1
Dysbindin domain containing 1.
      
 0.469
DEF8
Differentially expressed in FDCP 8 homolog.
      
 0.422
MNS1
Meiosis specific nuclear structural 1.
      
 0.416
HIBADH
3-hydroxyisobutyrate dehydrogenase.
      
 0.412
Your Current Organism:
Chelonoidis abingdonii
NCBI taxonomy Id: 106734
Other names: Abingdon island giant tortoise, C. abingdonii, Chelonoidis nigra abingdonii, Geochelone nigra abigdonii, Geochelone nigra abingdoni, Geochelone nigra ephippium
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.