STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GFI1BGrowth factor independent 1B transcriptional repressor. (330 aa)    
Predicted Functional Partners:
KDM1A
Lysine demethylase 1A.
    
 0.590
GATA1
GATA binding protein 1.
   
 0.589
LEO1
LEO1 homolog, Paf1/RNA polymerase II complex component.
    
  0.559
TAL1
TAL bHLH transcription factor 1, erythroid differentiation factor.
   
 0.549
CEBPE
CCAAT enhancer binding protein epsilon.
    
 0.542
CEBPA
CCAAT enhancer binding protein alpha.
    
 0.542
RCOR1
REST corepressor 1.
    
 0.522
GATA2
GATA binding protein 2.
   
 0.517
BARD1
BRCA1 associated RING domain 1.
    
  0.502
ENSCABP00000019037
annotation not available
    
  0.492
Your Current Organism:
Chelonoidis abingdonii
NCBI taxonomy Id: 106734
Other names: Abingdon island giant tortoise, C. abingdonii, Chelonoidis nigra abingdonii, Geochelone nigra abigdonii, Geochelone nigra abingdoni, Geochelone nigra ephippium
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.