STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMARCA1SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1. (981 aa)    
Predicted Functional Partners:
BAZ1A
Bromodomain adjacent to zinc finger domain 1A.
    
 0.993
BPTF
Bromodomain PHD finger transcription factor.
   
 0.984
CHRAC1
Chromatin accessibility complex subunit 1.
    
 0.981
RBBP7
RB binding protein 7, chromatin remodeling factor.
   
 0.974
RBBP4
RB binding protein 4, chromatin remodeling factor.
   
 0.974
ENSCABP00000002172
annotation not available
    
 0.970
ENSCABP00000021352
annotation not available
    
 0.970
RSF1
Remodeling and spacing factor 1.
   
 0.962
LEO1
LEO1 homolog, Paf1/RNA polymerase II complex component.
   
 0.947
ENSCABP00000004824
annotation not available
   
 0.932
Your Current Organism:
Chelonoidis abingdonii
NCBI taxonomy Id: 106734
Other names: Abingdon island giant tortoise, C. abingdonii, Chelonoidis nigra abingdonii, Geochelone nigra abigdonii, Geochelone nigra abingdoni, Geochelone nigra ephippium
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.