STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AIJ22074.1LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family. (314 aa)    
Predicted Functional Partners:
AIJ22075.1
Major facilitator transporter.
 
    0.827
AIJ25133.1
LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.489
AIJ21991.1
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.468
AIJ25377.1
Integral membrane protein.
  
     0.445
hcaR-3
LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.441
AIJ25088.1
LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.432
AIJ26898.1
LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.411
Your Current Organism:
Amycolatopsis methanolica
NCBI taxonomy Id: 1068978
Other names: A. methanolica 239, Amycolatopsis methanolica 239, Amycolatopsis methanolica IFO 15065, Amycolatopsis methanolica IMSNU 20055, Amycolatopsis methanolica KCTC 9411, Amycolatopsis methanolica NCIB 11946, Amycolatopsis methanolica NRRL B-24139, Amycolatopsis methanolica str. 239, Amycolatopsis methanolica strain 239
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