STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AIJ22173.1Hypothetical protein. (349 aa)    
Predicted Functional Partners:
AIJ22172.1
Otogelin.
 
     0.953
AIJ22171.1
Hypothetical protein.
       0.773
AIJ22178.1
Secretion protein snm4.
 
     0.771
AIJ22175.1
Hypothetical protein.
  
     0.759
AIJ22179.1
Hypothetical protein.
 
     0.743
AIJ25100.1
Family 1 extracellular solute-binding protein.
  
     0.610
AIJ22185.1
Hypothetical protein.
  
     0.567
sigA
Sigma-70 region 2 domain-containing protein; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
       0.539
AIJ27068.1
Isoniazid inducible gene protein IniC.
  
     0.537
ftsK-3
Cell division protein FtsK/SpoIIIE.
 
     0.527
Your Current Organism:
Amycolatopsis methanolica
NCBI taxonomy Id: 1068978
Other names: A. methanolica 239, Amycolatopsis methanolica 239, Amycolatopsis methanolica IFO 15065, Amycolatopsis methanolica IMSNU 20055, Amycolatopsis methanolica KCTC 9411, Amycolatopsis methanolica NCIB 11946, Amycolatopsis methanolica NRRL B-24139, Amycolatopsis methanolica str. 239, Amycolatopsis methanolica strain 239
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