STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fabG-15Putative 2-hydroxy(phenyl)methyl-succinyl-CoA DH BbsD. (257 aa)    
Predicted Functional Partners:
AIJ24936.1
2-enoyl acyl-CoA hydratase.
 
 0.932
paaG-24
enoyl-CoA hydratase/carnithine racemase; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 0.775
AIJ24725.1
Thiolase; Belongs to the thiolase-like superfamily. Thiolase family.
  
 
 0.770
AIJ24726.1
3-oxoacyl-(acyl-carrier-protein) reductase.
      
0.757
AIJ23607.1
Short-chain dehydrogenase/reductase SDR.
  
     0.743
AIJ24721.1
formyl-CoA transferase; Belongs to the CoA-transferase III family.
   
 
 0.724
AIJ24722.1
L-carnitine dehydratase/bile acid-inducible protein F; Belongs to the CoA-transferase III family.
   
 
 0.724
AIJ24724.1
Hypothetical protein.
       0.721
matC-3
Dicarboxylate-carrier protein.
     
 0.706
AIJ24661.1
3-alpha-hydroxysteroid dehydrogenase.
  
     0.676
Your Current Organism:
Amycolatopsis methanolica
NCBI taxonomy Id: 1068978
Other names: A. methanolica 239, Amycolatopsis methanolica 239, Amycolatopsis methanolica IFO 15065, Amycolatopsis methanolica IMSNU 20055, Amycolatopsis methanolica KCTC 9411, Amycolatopsis methanolica NCIB 11946, Amycolatopsis methanolica NRRL B-24139, Amycolatopsis methanolica str. 239, Amycolatopsis methanolica strain 239
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