STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000384315_06287Unannotated protein. (289 aa)    
Predicted Functional Partners:
GCA_000384315_06286
Unannotated protein.
 
  
  0.918
GCA_000384315_06288
Unannotated protein.
 
     0.835
GCA_000384315_04203
Unannotated protein.
 
     0.766
GCA_000384315_05571
Unannotated protein.
 
  
  0.741
GCA_000384315_08149
Unannotated protein.
 
  
  0.739
GCA_000384315_05213
Unannotated protein.
 
     0.682
GCA_000384315_03512
Unannotated protein.
 
     0.672
GCA_000384315_00441
Unannotated protein.
    
  0.621
GCA_000384315_05978
Unannotated protein.
 
  
  0.614
GCA_000384315_07231
Unannotated protein.
  
     0.612
Your Current Organism:
Amycolatopsis nigrescens
NCBI taxonomy Id: 1068980
Other names: A. nigrescens CSC17Ta-90, Amycolatopsis nigrescens CSC17Ta-90, Amycolatopsis nigrescens DSM 44992, Amycolatopsis nigrescens str. CSC17Ta-90, Amycolatopsis nigrescens strain CSC17Ta-90
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.