STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LRC_00900HpcH/hpaI aldolase/citrate lyase family protein; Belongs to the HpcH/HpaI aldolase family. (279 aa)    
Predicted Functional Partners:
LRC_00890
Exopolysaccharide biosynthesis protein.
 
     0.832
lysA
Diaminopimelate decarboxylase.
       0.757
LRC_00920
Glycosyltransferase.
 
    0.751
LRC_00870
Tyrosine-protein kinase.
  
    0.608
LRC_00860
Exopolysaccharide chain length regulator.
  
    0.577
LRC_00880
Phosphotyrosine-protein phosphatase.
  
    0.561
ilvE
Branched chain amino acid transaminase; Acts on leucine, isoleucine and valine. Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.
       0.533
LRC_00940
Glycosyltransferase.
       0.485
LRC_16710
NAD-dependent aldehyde dehydrogenase.
  
  
 0.465
LRC_17730
Aldehyde-alcohol dehydrogenase; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
  
  
 0.465
Your Current Organism:
Lactobacillus ruminis
NCBI taxonomy Id: 1069534
Other names: L. ruminis ATCC 27782, Lactobacillus ruminis ATCC 27782, Lactobacillus ruminis str. ATCC 27782, Lactobacillus ruminis strain ATCC 27782
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.