STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LRC_01410Bacterial sugar transferase. (483 aa)    
Predicted Functional Partners:
LRC_03800
UDP-N-acetyl-D-mannosamine transferase; Catalyzes the conversion of GlcNAc-PP-undecaprenol into ManNAc-GlcNAc-PP-undecaprenol, the first committed lipid intermediate in the de novo synthesis of teichoic acid.
   
 0.928
LRC_01380
Oligosaccharide translocase.
 
  
 0.883
LRC_01400
Putative capsular biosynthesis protein.
 
   
 0.854
LRC_00870
Tyrosine-protein kinase.
 
  
 0.839
LRC_01390
UDP-galactopyranose mutase.
     
 0.783
LRC_00860
Exopolysaccharide chain length regulator.
 
  
 0.747
LRC_01420
Glycosyltransferase.
 
  
 0.742
LRC_01020
Exoploysaccharide biosynthesis flippase enzyme.
 
  
 0.595
LRC_01370
Hypothetical membrane protein.
 
  
 0.571
LRC_00880
Phosphotyrosine-protein phosphatase.
  
  
 0.542
Your Current Organism:
Lactobacillus ruminis
NCBI taxonomy Id: 1069534
Other names: L. ruminis ATCC 27782, Lactobacillus ruminis ATCC 27782, Lactobacillus ruminis str. ATCC 27782, Lactobacillus ruminis strain ATCC 27782
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.