STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LRC_01480Putative transcriptional regulator. (145 aa)    
Predicted Functional Partners:
LRC_01490
Hypothetical membrane protein.
       0.773
LRC_10480
Conserved hypothetical protein.
  
     0.760
LRC_10490
Conserved hypothetical protein.
  
     0.757
LRC_06930
Conserved hypothetical protein.
  
     0.735
LRC_13880
Conserved hypothetical protein.
  
     0.707
yfoH
Glycosyltransferase.
  
     0.679
LRC_05870
Conserved hypothetical protein.
  
    0.668
tarI
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Catalyzes the transfer of the cytidylyl group of CTP to D- ribitol 5-phosphate.
       0.661
LRC_01470
NAD-dependent epimerase/dehydratase.
  
    0.661
azlD
Branched-chain amino acid transport protein.
  
     0.645
Your Current Organism:
Lactobacillus ruminis
NCBI taxonomy Id: 1069534
Other names: L. ruminis ATCC 27782, Lactobacillus ruminis ATCC 27782, Lactobacillus ruminis str. ATCC 27782, Lactobacillus ruminis strain ATCC 27782
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.