STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LRC_01510Conserved hypothetical protein. (177 aa)    
Predicted Functional Partners:
LRC_14340
Conserved hypothetical protein.
  
     0.645
rnc-3
Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
   
    0.548
LRC_08730
Phage integrase; Belongs to the 'phage' integrase family.
  
     0.535
LRC_01520
HAD superfamily hydrolase.
       0.493
LRC_19630
Conserved hypothetical membrane protein.
  
     0.475
LRC_19450
Conserved hypothetical membrane protein.
  
     0.470
LRC_17060
Sensor histidine protein kinase.
  
   
 0.464
LRC_17070
Response regulator.
  
    0.452
LRC_17860
Lysine permease.
  
    0.423
LRC_01530
Thioredoxin; Belongs to the thioredoxin family.
       0.419
Your Current Organism:
Lactobacillus ruminis
NCBI taxonomy Id: 1069534
Other names: L. ruminis ATCC 27782, Lactobacillus ruminis ATCC 27782, Lactobacillus ruminis str. ATCC 27782, Lactobacillus ruminis strain ATCC 27782
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.