STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
oppAOligopeptide-binding protein. (542 aa)    
Predicted Functional Partners:
opp
Oligopeptide transport system permease protein.
 
 0.993
LRC_01900
Oligopeptide transport system permease protein.
 
 0.991
opp-2
Oligopeptide transport ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 0.989
opp-3
Oligopeptide transport ATP-binding protein.
 
 0.986
LRC_01780
Oligopeptide ABC superfamily ATP binding cassette transporter,binding protein.
  
  
 
0.923
LRC_10410
Bacterial extracellular solute-binding protein.
  
  
 
0.906
LRC_18910
Oligopeptide ABC superfamily ATP binding cassette transporter, binding protein.
  
  
 
0.901
LRC_18930
Oligopeptide ABC superfamily ATP binding cassette transporter, binding protein.
  
  
 
0.901
LRC_17560
ABC transporter, permease subunit.
 
  
 0.451
LRC_17540
ABC transporter substrate-binding component.
  
 
 0.434
Your Current Organism:
Lactobacillus ruminis
NCBI taxonomy Id: 1069534
Other names: L. ruminis ATCC 27782, Lactobacillus ruminis ATCC 27782, Lactobacillus ruminis str. ATCC 27782, Lactobacillus ruminis strain ATCC 27782
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.