STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LRC_03200TetR family transcriptional regulator. (176 aa)    
Predicted Functional Partners:
LRC_02100
Hypothetical membrane protein.
 
  
 0.814
LRC_19690
Phosphoesterase, DHH family protein.
  
   
 0.685
frd
Fumarate reductase flavoprotein subunit; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily.
       0.565
LRC_17600
Putative CoA-substrate-specific enzyme activase.
     
 0.514
hicD
L-2-hydroxyisocaproate dehydrogenase; Belongs to the LDH/MDH superfamily.
     
 0.506
LRC_00540
Hypothetical protein.
  
     0.465
pth
Peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family.
   
    0.459
LRC_07380
Phage minor structural protein.
  
   
 0.450
LRC_01510
Conserved hypothetical protein.
  
    0.412
LRC_18260
AraC family transcriptional regulator.
  
  
 0.408
Your Current Organism:
Lactobacillus ruminis
NCBI taxonomy Id: 1069534
Other names: L. ruminis ATCC 27782, Lactobacillus ruminis ATCC 27782, Lactobacillus ruminis str. ATCC 27782, Lactobacillus ruminis strain ATCC 27782
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.