STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LRC_04170Conserved hypothetical protein. (196 aa)    
Predicted Functional Partners:
sbcD
Nuclease SbcCD, D subunit; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family.
       0.678
sbcC
Exonuclease SbcCD, C subunit.
       0.678
LRC_19250
Conserved hypothetical protein.
  
     0.580
LRC_04400
Amino acid ABC transporter, substrate binding protein.
  
     0.577
fur-2
Ferric uptake regulation protein; Belongs to the Fur family.
       0.538
LRC_10470
Conserved hypothetical protein.
  
     0.498
LRC_13880
Conserved hypothetical protein.
  
     0.471
cinA
Competence/damage-inducible protein CinA; Belongs to the CinA family.
     
 0.463
LRC_13920
Conserved hypothetical protein.
  
     0.444
LRC_01640
Hypothetical secreted protein contaning cell wall binding repeats.
  
     0.436
Your Current Organism:
Lactobacillus ruminis
NCBI taxonomy Id: 1069534
Other names: L. ruminis ATCC 27782, Lactobacillus ruminis ATCC 27782, Lactobacillus ruminis str. ATCC 27782, Lactobacillus ruminis strain ATCC 27782
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.