STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LRC_05100Copper chaperone. (73 aa)    
Predicted Functional Partners:
LRC_05090
Cation-transporting ATPase.
 
 
 0.961
LRC_05110
CRP family transcriptional regulator.
 
  
 0.906
LRC_01450
Lead, cadmium, zinc and mercury transporting ATPase.
  
 
 0.848
LRC_19210
Zinc/cadmium-transporting ATPase.
  
 
 0.848
LRC_19680
Transcriptional regulator, ArsR family.
  
  
 0.647
LRC_15090
Ferritin, Dps family protein; Belongs to the Dps family.
  
  
 0.601
LRC_15450
Glutaredoxin.
 
   
 0.544
rplN
50S ribosomal protein L14P; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family.
    
   0.516
asnC
AsnC family transcriptional regulator.
     
 0.426
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
   
   0.413
Your Current Organism:
Lactobacillus ruminis
NCBI taxonomy Id: 1069534
Other names: L. ruminis ATCC 27782, Lactobacillus ruminis ATCC 27782, Lactobacillus ruminis str. ATCC 27782, Lactobacillus ruminis strain ATCC 27782
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.