STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LRC_06100Phosphoribosyltransferase. (216 aa)    
Predicted Functional Partners:
LRC_06090
DEAD/DEAH box helicase.
  
  
 0.927
LRC_12560
ComE operon protein 3.
  
  
 0.761
flgC
Flagellar basal-body rod protein, FlgC; Belongs to the flagella basal body rod proteins family.
   
   0.706
radC
DNA repair protein; Belongs to the UPF0758 family.
  
    0.699
LRC_06080
Conserved hypothetical protein.
  
    0.693
yfiA
Ribosome-associated factor Y; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth.
  
    0.690
LRC_09660
DNA processing protein.
  
 
 0.690
LRC_18950
Prephenate dehydrogenase.
   
  
 0.651
LRC_12580
ComE operon protein 1.
  
  
 0.643
nagA
N-acetylglucosamine-6-phosphate deacetylase.
  
    0.624
Your Current Organism:
Lactobacillus ruminis
NCBI taxonomy Id: 1069534
Other names: L. ruminis ATCC 27782, Lactobacillus ruminis ATCC 27782, Lactobacillus ruminis str. ATCC 27782, Lactobacillus ruminis strain ATCC 27782
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.