STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LRC_10650ABC transporter, ATP-binding protein. (244 aa)    
Predicted Functional Partners:
LRC_13100
Polar amino acid ABC transporter permease.
 
 0.990
LRC_18670
Glutamate ABC superfamily ATP binding cassette transporter permease protein.
 
 0.978
LRC_13800
Glutamate ABC superfamily ATP binding cassette transporter, membrane protein.
 
 0.973
LRC_17200
ABC-type amino acid transport system, permease component.
 
 0.965
LRC_03220
ABC transporter.
 
    
0.909
LRC_16830
ABC transporter permease; Belongs to the binding-protein-dependent transport system permease family.
 
    
 0.905
LRC_02320
ABC transporter permease protein.
 
      0.900
LRC_03260
Multidrug resistance ABC transporter ATP-binding and permease protein.
 
     
0.899
LRC_01900
Oligopeptide transport system permease protein.
 
    
 0.886
LRC_17390
ABC transporter permease.
 
 0.837
Your Current Organism:
Lactobacillus ruminis
NCBI taxonomy Id: 1069534
Other names: L. ruminis ATCC 27782, Lactobacillus ruminis ATCC 27782, Lactobacillus ruminis str. ATCC 27782, Lactobacillus ruminis strain ATCC 27782
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