STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LRC_11250Aminopeptidase N. (847 aa)    
Predicted Functional Partners:
LRC_13280
Conserved hypothetical protein; Belongs to the glutamate--cysteine ligase type 1 family.
     
 0.908
cysK
Cysteine synthase; Belongs to the cysteine synthase/cystathionine beta- synthase family.
    
 0.826
LRC_17430
Aminotransferase.
     
  0.800
pepX
Xaa-Pro dipeptidyl-peptidase; Removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline; Belongs to the peptidase S15 family.
 
   
 0.734
pepR
Prolinase; Releases the N-terminal proline from various substrates. Belongs to the peptidase S33 family.
  
 
 0.646
LRC_19360
Oligoendopeptidase O.
 
   
 0.603
tetA
Translation elongation factor.
  
 
 0.599
LRC_15310
Conserved hypothetical protein.
  
     0.594
LRC_11240
LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
 
   
 0.584
LRC_08270
Xaa-Pro dipeptidase.
  
 
 0.564
Your Current Organism:
Lactobacillus ruminis
NCBI taxonomy Id: 1069534
Other names: L. ruminis ATCC 27782, Lactobacillus ruminis ATCC 27782, Lactobacillus ruminis str. ATCC 27782, Lactobacillus ruminis strain ATCC 27782
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.