STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LRC_14660ComG operon protein 3. (108 aa)    
Predicted Functional Partners:
LRC_14670
ComG operon protein 2.
 
  
 0.984
LRC_14650
Conserved hypothetical protein.
  
  
 0.970
LRC_14680
ComG operon protein 1.
  
  
 0.966
LRC_12560
ComE operon protein 3.
   
  
 0.741
LRC_06090
DEAD/DEAH box helicase.
   
  
 0.656
LRC_12580
ComE operon protein 1.
   
  
 0.645
pilD
Hypothetical peptidase.
  
  
 0.594
LRC_14710
Conserved hypothetical protein.
       0.529
LRC_14630
Transposase.
       0.508
LRC_14640
Transposase.
       0.508
Your Current Organism:
Lactobacillus ruminis
NCBI taxonomy Id: 1069534
Other names: L. ruminis ATCC 27782, Lactobacillus ruminis ATCC 27782, Lactobacillus ruminis str. ATCC 27782, Lactobacillus ruminis strain ATCC 27782
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.