STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LRC_16750Two-component response regulator. (238 aa)    
Predicted Functional Partners:
LRC_16740
Two-component sensor histidine kinase.
 
 0.945
LRC_02070
Two component system histidine kinase.
 
 0.903
LRC_06200
Two component system histidine kinase.
 
 0.893
LRC_01580
Signal transduction histidine kinase.
 
 0.869
LRC_14910
Two component system histidine kinase.
 
 0.840
LRC_00410
Two-component sensor kinase.
 
 0.809
LRC_16760
Putative surface protein.
       0.468
LRC_03900
FIST domain containing protein.
  
    0.457
LRC_18180
Hypothetical protein.
    
   0.437
xthA
Exodeoxyribonuclease III.
   
  
 0.432
Your Current Organism:
Lactobacillus ruminis
NCBI taxonomy Id: 1069534
Other names: L. ruminis ATCC 27782, Lactobacillus ruminis ATCC 27782, Lactobacillus ruminis str. ATCC 27782, Lactobacillus ruminis strain ATCC 27782
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.