STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LRC_17060Sensor histidine protein kinase. (436 aa)    
Predicted Functional Partners:
LRC_17070
Response regulator.
 
 
 0.998
LRC_17080
Putative bacteriocin ABC transporter ATP binding protein.
 
   
 0.947
LRC_17040
Bacterocin transport accessory protein.
     
 0.733
LRC_19080
ABC-type sugar transport system, periplasmic component.
  
 
 0.731
LRC_17030
Potential bacteriocin immunity protein.
     
 0.729
LRC_17090
Hypothetical protein.
       0.634
LRC_17110
Putative bacteriocin immunity protein.
      
 0.630
LRC_18330
Response regulator of the LytR/AlgR family.
 
  
 0.618
LRC_18390
Response regulator of the LytR/AlgR family protein.
 
  
 0.598
LRC_13330
Putative Glycerophosphoryl diester phosphodiesterase.
  
     0.534
Your Current Organism:
Lactobacillus ruminis
NCBI taxonomy Id: 1069534
Other names: L. ruminis ATCC 27782, Lactobacillus ruminis ATCC 27782, Lactobacillus ruminis str. ATCC 27782, Lactobacillus ruminis strain ATCC 27782
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.