STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LRC_17170Putative NAD-dependent aldehyde dehydrogenase. (453 aa)    
Predicted Functional Partners:
LRC_17180
Aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 0.988
frd
Fumarate reductase flavoprotein subunit; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily.
  
 0.954
prpC
Methylcitrate synthase; Belongs to the citrate synthase family.
 
 0.915
pckA
Phosphoenolpyruvate carboxykinase (ATP).
  
 
 0.899
pyc
Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second.
 
 
 0.844
LRC_05960
Isocitrate dehydrogenase.
 
 
 0.818
LRC_17190
ABC transporter, ATP-binding protein.
 
  
 0.708
LRC_17200
ABC-type amino acid transport system, permease component.
  
    0.667
LRC_05790
Oxidoreductase.
  
  
 0.666
LRC_14850
Oxidoreductase family, NAD-binding Rossmann fold protein.
   
  
 0.610
Your Current Organism:
Lactobacillus ruminis
NCBI taxonomy Id: 1069534
Other names: L. ruminis ATCC 27782, Lactobacillus ruminis ATCC 27782, Lactobacillus ruminis str. ATCC 27782, Lactobacillus ruminis strain ATCC 27782
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