STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PNEG_02422Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily. (380 aa)    
Predicted Functional Partners:
PNEG_01529
WD_REPEATS_REGION domain-containing protein.
   
 0.935
PNEG_00381
HDAC_interact domain-containing protein.
   
 0.929
PNEG_03052
MRG domain-containing protein.
    
 0.894
PNEG_01363
Uncharacterized protein.
    
 0.887
PNEG_02709
Uncharacterized protein.
   
 0.884
PNEG_02596
SANT domain-containing protein.
    
 0.872
PNEG_00396
Uncharacterized protein.
   
 0.867
PNEG_01867
Uncharacterized protein.
   
 0.864
PNEG_00427
Uncharacterized protein.
   
 0.856
PNEG_00825
Uncharacterized protein.
    
 0.847
Your Current Organism:
Pneumocystis murina
NCBI taxonomy Id: 1069680
Other names: P. murina B123, Pneumocystis murina B123
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.