PNEG_02730 protein (Pneumocystis murina) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

PNEG_02730

Uncharacterized protein. (423 aa)

Predicted Functional Partners:

PNEG_00387

0.999

PNEG_00799

0.999

PNEG_01862

0.995

PNEG_01440

0.983

PNEG_01137

0.895

PNEG_02095

0.861

PNEG_01699

0.835

PNEG_01554

0.832

PNEG_02371

0.817

PNEG_02870

0.817

Your Current Organism:

Pneumocystis murina

NCBI taxonomy Id: 1069680
Other names: P. murina B123, Pneumocystis murina B123

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PNEG_00387	PNEG_00799	M7PBW0	M7PL65	E2_bind domain-containing protein.	JmjC domain-containing protein.	0.999
PNEG_00387	PNEG_01440	M7PBW0	M7NSS3	E2_bind domain-containing protein.	NEDD8 protein.	0.999
PNEG_00387	PNEG_01554	M7PBW0	M7NNN9	E2_bind domain-containing protein.	Ubiquitin-conjugating enzyme E2-18 kDa; Belongs to the ubiquitin-conjugating enzyme family.	0.842
PNEG_00387	PNEG_01699	M7PBW0	M7P7U6	E2_bind domain-containing protein.	Polyubiquitin.	0.903
PNEG_00387	PNEG_01862	M7PBW0	M7NQZ1	E2_bind domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.998
PNEG_00387	PNEG_02095	M7PBW0	M7NQG2	E2_bind domain-containing protein.	Ubiquitin-like protein pmt3/smt3.	0.904
PNEG_00387	PNEG_02371	M7PBW0	M7NL86	E2_bind domain-containing protein.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.917
PNEG_00387	PNEG_02730	M7PBW0	M7NPD1	E2_bind domain-containing protein.	Uncharacterized protein.	0.999
PNEG_00387	PNEG_02870	M7PBW0	M7NN86	E2_bind domain-containing protein.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.916
PNEG_00799	PNEG_00387	M7PL65	M7PBW0	JmjC domain-containing protein.	E2_bind domain-containing protein.	0.999
PNEG_00799	PNEG_01440	M7PL65	M7NSS3	JmjC domain-containing protein.	NEDD8 protein.	0.999
PNEG_00799	PNEG_01699	M7PL65	M7P7U6	JmjC domain-containing protein.	Polyubiquitin.	0.999
PNEG_00799	PNEG_01862	M7PL65	M7NQZ1	JmjC domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.998
PNEG_00799	PNEG_02095	M7PL65	M7NQG2	JmjC domain-containing protein.	Ubiquitin-like protein pmt3/smt3.	0.443
PNEG_00799	PNEG_02371	M7PL65	M7NL86	JmjC domain-containing protein.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.999
PNEG_00799	PNEG_02730	M7PL65	M7NPD1	JmjC domain-containing protein.	Uncharacterized protein.	0.999
PNEG_00799	PNEG_02870	M7PL65	M7NN86	JmjC domain-containing protein.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.999
PNEG_01137	PNEG_01440	M7NTJ5	M7NSS3	Ribosomal protein; Belongs to the universal ribosomal protein uL1 family.	NEDD8 protein.	0.881
PNEG_01137	PNEG_01699	M7NTJ5	M7P7U6	Ribosomal protein; Belongs to the universal ribosomal protein uL1 family.	Polyubiquitin.	0.983
PNEG_01137	PNEG_02730	M7NTJ5	M7NPD1	Ribosomal protein; Belongs to the universal ribosomal protein uL1 family.	Uncharacterized protein.	0.895