PNEG_02516 protein (Pneumocystis murina) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

PNEG_02516

Rab-GAP TBC domain-containing protein. (727 aa)

Predicted Functional Partners:

PNEG_01604

0.975

PNEG_00978

0.898

PNEG_02017

0.744

PNEG_02016

0.744

PNEG_00946

0.711

PNEG_03054

0.685

PNEG_01017

0.675

PNEG_02573

0.674

PNEG_03463

0.672

PNEG_00239

0.666

Your Current Organism:

Pneumocystis murina

NCBI taxonomy Id: 1069680
Other names: P. murina B123, Pneumocystis murina B123

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PNEG_00239	PNEG_00946	M7NST8	M7PK38	Uncharacterized protein.	Uncharacterized protein.	0.709
PNEG_00239	PNEG_01604	M7NST8	M7NTE2	Uncharacterized protein.	Uncharacterized protein.	0.771
PNEG_00239	PNEG_02016	M7NST8	M7P7K5	Uncharacterized protein.	Uncharacterized protein.	0.870
PNEG_00239	PNEG_02017	M7NST8	M7NRW2	Uncharacterized protein.	Uncharacterized protein.	0.870
PNEG_00239	PNEG_02516	M7NST8	M7NPY6	Uncharacterized protein.	Rab-GAP TBC domain-containing protein.	0.666
PNEG_00946	PNEG_00239	M7PK38	M7NST8	Uncharacterized protein.	Uncharacterized protein.	0.709
PNEG_00946	PNEG_01604	M7PK38	M7NTE2	Uncharacterized protein.	Uncharacterized protein.	0.738
PNEG_00946	PNEG_02016	M7PK38	M7P7K5	Uncharacterized protein.	Uncharacterized protein.	0.830
PNEG_00946	PNEG_02017	M7PK38	M7NRW2	Uncharacterized protein.	Uncharacterized protein.	0.844
PNEG_00946	PNEG_02516	M7PK38	M7NPY6	Uncharacterized protein.	Rab-GAP TBC domain-containing protein.	0.711
PNEG_00946	PNEG_02573	M7PK38	M7PFK7	Uncharacterized protein.	GTP-binding protein ypt1.	0.728
PNEG_00946	PNEG_03463	M7PK38	M7NLK8	Uncharacterized protein.	Uncharacterized protein.	0.657
PNEG_00978	PNEG_02516	M7NU74	M7NPY6	Mitochondrial fission 1 protein; Has a role in mitochondrial fission.	Rab-GAP TBC domain-containing protein.	0.898
PNEG_01017	PNEG_02516	M7PAJ5	M7NPY6	40S ribosomal protein S21; Required for the processing of the 20S rRNA-precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. Has a physiological role leading to 18S rRNA stability.	Rab-GAP TBC domain-containing protein.	0.675
PNEG_01604	PNEG_00239	M7NTE2	M7NST8	Uncharacterized protein.	Uncharacterized protein.	0.771
PNEG_01604	PNEG_00946	M7NTE2	M7PK38	Uncharacterized protein.	Uncharacterized protein.	0.738
PNEG_01604	PNEG_02016	M7NTE2	M7P7K5	Uncharacterized protein.	Uncharacterized protein.	0.735
PNEG_01604	PNEG_02017	M7NTE2	M7NRW2	Uncharacterized protein.	Uncharacterized protein.	0.739
PNEG_01604	PNEG_02516	M7NTE2	M7NPY6	Uncharacterized protein.	Rab-GAP TBC domain-containing protein.	0.975
PNEG_01604	PNEG_02573	M7NTE2	M7PFK7	Uncharacterized protein.	GTP-binding protein ypt1.	0.836