PNEG_02365 protein (Pneumocystis murina) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

PNEG_02365

Endo/exonuclease/phosphatase domain-containing protein. (404 aa)

Predicted Functional Partners:

PNEG_00618

0.964

PNEG_00058

0.920

PNEG_01477

0.875

PNEG_00726

0.852

PNEG_01795

0.814

PNEG_00846

0.782

PNEG_00993

0.699

PNEG_00999

0.690

PNEG_02048

0.690

PNEG_00270

0.687

Your Current Organism:

Pneumocystis murina

NCBI taxonomy Id: 1069680
Other names: P. murina B123, Pneumocystis murina B123

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PNEG_00058	PNEG_00270	M7NS88	M7NSW2	Tubulin gamma chain; Tubulin is the major constituent of microtubules. The gamma chain is found at microtubule organizing centers (MTOC) such as the spindle poles or the centrosome.	WD_REPEATS_REGION domain-containing protein.	0.406
PNEG_00058	PNEG_00993	M7NS88	M7NU88	Tubulin gamma chain; Tubulin is the major constituent of microtubules. The gamma chain is found at microtubule organizing centers (MTOC) such as the spindle poles or the centrosome.	Uncharacterized protein.	0.422
PNEG_00058	PNEG_02365	M7NS88	M7NQ82	Tubulin gamma chain; Tubulin is the major constituent of microtubules. The gamma chain is found at microtubule organizing centers (MTOC) such as the spindle poles or the centrosome.	Endo/exonuclease/phosphatase domain-containing protein.	0.920
PNEG_00270	PNEG_00058	M7NSW2	M7NS88	WD_REPEATS_REGION domain-containing protein.	Tubulin gamma chain; Tubulin is the major constituent of microtubules. The gamma chain is found at microtubule organizing centers (MTOC) such as the spindle poles or the centrosome.	0.406
PNEG_00270	PNEG_02365	M7NSW2	M7NQ82	WD_REPEATS_REGION domain-containing protein.	Endo/exonuclease/phosphatase domain-containing protein.	0.687
PNEG_00618	PNEG_00726	M7NQL5	M7PB64	Sphingolipid delta(4)-desaturase; Delta(4)-fatty-acid desaturase which introduces a double bond at the 4-position in the long-chain base (LCB) of ceramides.	Uncharacterized protein.	0.877
PNEG_00618	PNEG_00846	M7NQL5	M7PA03	Sphingolipid delta(4)-desaturase; Delta(4)-fatty-acid desaturase which introduces a double bond at the 4-position in the long-chain base (LCB) of ceramides.	Uncharacterized protein.	0.784
PNEG_00618	PNEG_00999	M7NQL5	M7NQ71	Sphingolipid delta(4)-desaturase; Delta(4)-fatty-acid desaturase which introduces a double bond at the 4-position in the long-chain base (LCB) of ceramides.	TLC domain-containing protein.	0.933
PNEG_00618	PNEG_01477	M7NQL5	M7PIB7	Sphingolipid delta(4)-desaturase; Delta(4)-fatty-acid desaturase which introduces a double bond at the 4-position in the long-chain base (LCB) of ceramides.	Uncharacterized protein.	0.888
PNEG_00618	PNEG_02048	M7NQL5	M7NRH1	Sphingolipid delta(4)-desaturase; Delta(4)-fatty-acid desaturase which introduces a double bond at the 4-position in the long-chain base (LCB) of ceramides.	TLC domain-containing protein.	0.968
PNEG_00618	PNEG_02365	M7NQL5	M7NQ82	Sphingolipid delta(4)-desaturase; Delta(4)-fatty-acid desaturase which introduces a double bond at the 4-position in the long-chain base (LCB) of ceramides.	Endo/exonuclease/phosphatase domain-containing protein.	0.964
PNEG_00726	PNEG_00618	M7PB64	M7NQL5	Uncharacterized protein.	Sphingolipid delta(4)-desaturase; Delta(4)-fatty-acid desaturase which introduces a double bond at the 4-position in the long-chain base (LCB) of ceramides.	0.877
PNEG_00726	PNEG_00846	M7PB64	M7PA03	Uncharacterized protein.	Uncharacterized protein.	0.861
PNEG_00726	PNEG_00999	M7PB64	M7NQ71	Uncharacterized protein.	TLC domain-containing protein.	0.691
PNEG_00726	PNEG_01477	M7PB64	M7PIB7	Uncharacterized protein.	Uncharacterized protein.	0.798
PNEG_00726	PNEG_02048	M7PB64	M7NRH1	Uncharacterized protein.	TLC domain-containing protein.	0.691
PNEG_00726	PNEG_02365	M7PB64	M7NQ82	Uncharacterized protein.	Endo/exonuclease/phosphatase domain-containing protein.	0.852
PNEG_00846	PNEG_00618	M7PA03	M7NQL5	Uncharacterized protein.	Sphingolipid delta(4)-desaturase; Delta(4)-fatty-acid desaturase which introduces a double bond at the 4-position in the long-chain base (LCB) of ceramides.	0.784
PNEG_00846	PNEG_00726	M7PA03	M7PB64	Uncharacterized protein.	Uncharacterized protein.	0.861
PNEG_00846	PNEG_00999	M7PA03	M7NQ71	Uncharacterized protein.	TLC domain-containing protein.	0.709