PNEG_01020 protein (Pneumocystis murina) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

PNEG_01020

CULLIN_2 domain-containing protein; Belongs to the cullin family. (819 aa)

Predicted Functional Partners:

PNEG_01620

0.999

PNEG_00277

0.999

PNEG_01300

0.998

PNEG_02256

0.980

PNEG_01613

0.977

PNEG_01941

0.976

PNEG_02054

0.971

PNEG_01095

0.965

PNEG_03230

0.958

PNEG_01836

0.951

Your Current Organism:

Pneumocystis murina

NCBI taxonomy Id: 1069680
Other names: P. murina B123, Pneumocystis murina B123

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PNEG_00277	PNEG_01020	M7NVT9	M7NQ87	CPSF_A domain-containing protein.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.999
PNEG_00277	PNEG_01095	M7NVT9	M7PAQ8	CPSF_A domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.997
PNEG_00277	PNEG_01300	M7NVT9	M7P9P8	CPSF_A domain-containing protein.	E3 ubiquitin-protein ligase RBX1.	0.998
PNEG_00277	PNEG_01613	M7NVT9	M7NTF0	CPSF_A domain-containing protein.	MPN domain-containing protein.	0.931
PNEG_00277	PNEG_01620	M7NVT9	M7NNU5	CPSF_A domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.999
PNEG_00277	PNEG_01836	M7NVT9	M7NS29	CPSF_A domain-containing protein.	CDT1_C domain-containing protein.	0.823
PNEG_00277	PNEG_01941	M7NVT9	M7NR97	CPSF_A domain-containing protein.	Uncharacterized protein.	0.982
PNEG_00277	PNEG_02054	M7NVT9	M7P7P1	CPSF_A domain-containing protein.	TIP120 domain-containing protein.	0.831
PNEG_00277	PNEG_02256	M7NVT9	M7NQD6	CPSF_A domain-containing protein.	Histone-lysine N-methyltransferase; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. Suvar3-9 subfamily.	0.982
PNEG_00277	PNEG_03230	M7NVT9	M7NII6	CPSF_A domain-containing protein.	DNA damage-binding protein CMR1; DNA-binding protein that binds to both single- and double- stranded DNA. Binds preferentially to UV-damaged DNA. May be involved in DNA-metabolic processes.	0.988
PNEG_01020	PNEG_00277	M7NQ87	M7NVT9	CULLIN_2 domain-containing protein; Belongs to the cullin family.	CPSF_A domain-containing protein.	0.999
PNEG_01020	PNEG_01095	M7NQ87	M7PAQ8	CULLIN_2 domain-containing protein; Belongs to the cullin family.	WD_REPEATS_REGION domain-containing protein.	0.965
PNEG_01020	PNEG_01300	M7NQ87	M7P9P8	CULLIN_2 domain-containing protein; Belongs to the cullin family.	E3 ubiquitin-protein ligase RBX1.	0.998
PNEG_01020	PNEG_01613	M7NQ87	M7NTF0	CULLIN_2 domain-containing protein; Belongs to the cullin family.	MPN domain-containing protein.	0.977
PNEG_01020	PNEG_01620	M7NQ87	M7NNU5	CULLIN_2 domain-containing protein; Belongs to the cullin family.	WD_REPEATS_REGION domain-containing protein.	0.999
PNEG_01020	PNEG_01836	M7NQ87	M7NS29	CULLIN_2 domain-containing protein; Belongs to the cullin family.	CDT1_C domain-containing protein.	0.951
PNEG_01020	PNEG_01941	M7NQ87	M7NR97	CULLIN_2 domain-containing protein; Belongs to the cullin family.	Uncharacterized protein.	0.976
PNEG_01020	PNEG_02054	M7NQ87	M7P7P1	CULLIN_2 domain-containing protein; Belongs to the cullin family.	TIP120 domain-containing protein.	0.971
PNEG_01020	PNEG_02256	M7NQ87	M7NQD6	CULLIN_2 domain-containing protein; Belongs to the cullin family.	Histone-lysine N-methyltransferase; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. Suvar3-9 subfamily.	0.980
PNEG_01020	PNEG_03230	M7NQ87	M7NII6	CULLIN_2 domain-containing protein; Belongs to the cullin family.	DNA damage-binding protein CMR1; DNA-binding protein that binds to both single- and double- stranded DNA. Binds preferentially to UV-damaged DNA. May be involved in DNA-metabolic processes.	0.958