PNEG_01889 protein (Pneumocystis murina) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

PNEG_01889

Uncharacterized protein. (365 aa)

Predicted Functional Partners:

PNEG_02642

0.999

PNEG_01199

0.981

PNEG_01443

0.935

PNEG_04317

0.921

PNEG_03414

0.900

PNEG_03541

0.874

PNEG_00741

0.789

PNEG_02385

0.745

PNEG_03555

0.745

PNEG_03253

0.742

Your Current Organism:

Pneumocystis murina

NCBI taxonomy Id: 1069680
Other names: P. murina B123, Pneumocystis murina B123

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PNEG_00741	PNEG_01199	M7PB80	M7NTQ1	Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.	RECA_2 domain-containing protein.	0.885
PNEG_00741	PNEG_01443	M7PB80	M7PI82	Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.	Meiotic recombination protein dmc1; Belongs to the RecA family.	0.875
PNEG_00741	PNEG_01889	M7PB80	M7NR21	Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.	Uncharacterized protein.	0.789
PNEG_00741	PNEG_02385	M7PB80	M7NLA0	Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.	Uncharacterized protein.	0.971
PNEG_00741	PNEG_02642	M7PB80	M7NP30	Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.	3'-5' exonuclease domain-containing protein.	0.999
PNEG_00741	PNEG_03253	M7PB80	M7NMH2	Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.	Uncharacterized protein.	0.998
PNEG_00741	PNEG_03414	M7PB80	M7NM24	Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.	DNA repair protein RAD51 homolog; Required both for recombination and for the repair of DNA damage caused by X-rays; Belongs to the RecA family. RAD51 subfamily.	0.965
PNEG_00741	PNEG_03541	M7PB80	M7NLN0	Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.	RECA_2 domain-containing protein.	0.882
PNEG_00741	PNEG_03555	M7PB80	M7NLP6	Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.	ERCC4 domain-containing protein.	0.891
PNEG_00741	PNEG_04317	M7PB80	A0A0W4ZWX8	Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.	RECA_2 domain-containing protein.	0.877
PNEG_01199	PNEG_00741	M7NTQ1	M7PB80	RECA_2 domain-containing protein.	Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.	0.885
PNEG_01199	PNEG_01443	M7NTQ1	M7PI82	RECA_2 domain-containing protein.	Meiotic recombination protein dmc1; Belongs to the RecA family.	0.947
PNEG_01199	PNEG_01889	M7NTQ1	M7NR21	RECA_2 domain-containing protein.	Uncharacterized protein.	0.981
PNEG_01199	PNEG_02385	M7NTQ1	M7NLA0	RECA_2 domain-containing protein.	Uncharacterized protein.	0.914
PNEG_01199	PNEG_02642	M7NTQ1	M7NP30	RECA_2 domain-containing protein.	3'-5' exonuclease domain-containing protein.	0.999
PNEG_01199	PNEG_03253	M7NTQ1	M7NMH2	RECA_2 domain-containing protein.	Uncharacterized protein.	0.903
PNEG_01199	PNEG_03414	M7NTQ1	M7NM24	RECA_2 domain-containing protein.	DNA repair protein RAD51 homolog; Required both for recombination and for the repair of DNA damage caused by X-rays; Belongs to the RecA family. RAD51 subfamily.	0.871
PNEG_01199	PNEG_03555	M7NTQ1	M7NLP6	RECA_2 domain-containing protein.	ERCC4 domain-containing protein.	0.900
PNEG_01199	PNEG_04317	M7NTQ1	A0A0W4ZWX8	RECA_2 domain-containing protein.	RECA_2 domain-containing protein.	0.962
PNEG_01443	PNEG_00741	M7PI82	M7PB80	Meiotic recombination protein dmc1; Belongs to the RecA family.	Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.	0.875