STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PNEG_01704LisH domain-containing protein. (264 aa)    
Predicted Functional Partners:
PNEG_02978
Nop domain-containing protein.
   
 
 0.980
PNEG_01361
Nop domain-containing protein.
   
 
 0.970
PNEG_03364
rRNA 2'-O-methyltransferase fibrillarin.
   
 
 0.962
PNEG_02895
Centromere/microtubule-binding protein CBF5.
   
 
 0.960
PNEG_00525
Uncharacterized protein.
   
 
 0.920
PNEG_04282
Uncharacterized protein.
   
 0.918
PNEG_02603
Ribosomal RNA small subunit methyltransferase B; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
   
   0.892
PNEG_02400
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.861
PNEG_01616
tRNA pseudouridine(55) synthase.
   
 
 0.846
PNEG_02100
CBF domain-containing protein.
   
   0.845
Your Current Organism:
Pneumocystis murina
NCBI taxonomy Id: 1069680
Other names: P. murina B123, Pneumocystis murina B123
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