PNEG_01709 protein (Pneumocystis murina) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

PNEG_01709

ANK_REP_REGION domain-containing protein. (474 aa)

Predicted Functional Partners:

PNEG_02056

0.910

PNEG_01329

0.872

TIF6

0.821

PNEG_00950

0.782

PNEG_00484

0.739

PNEG_03326

0.731

PNEG_01417

0.656

PNEG_03585

0.610

PNEG_03209

0.592

PNEG_03048

0.590

Your Current Organism:

Pneumocystis murina

NCBI taxonomy Id: 1069680
Other names: P. murina B123, Pneumocystis murina B123

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PNEG_00484	PNEG_00950	M7PLX6	M7NQ32	zf-C2HC5 domain-containing protein.	Uncharacterized protein.	0.455
PNEG_00484	PNEG_01709	M7PLX6	M7NS56	zf-C2HC5 domain-containing protein.	ANK_REP_REGION domain-containing protein.	0.739
PNEG_00950	PNEG_00484	M7NQ32	M7PLX6	Uncharacterized protein.	zf-C2HC5 domain-containing protein.	0.455
PNEG_00950	PNEG_01329	M7NQ32	M7NU28	Uncharacterized protein.	Uncharacterized protein.	0.529
PNEG_00950	PNEG_01709	M7NQ32	M7NS56	Uncharacterized protein.	ANK_REP_REGION domain-containing protein.	0.782
PNEG_00950	PNEG_02056	M7NQ32	M7NRZ4	Uncharacterized protein.	Cell division control protein 48; Belongs to the AAA ATPase family.	0.712
PNEG_00950	PNEG_03326	M7NQ32	M7NN00	Uncharacterized protein.	Uncharacterized protein.	0.747
PNEG_01329	PNEG_00950	M7NU28	M7NQ32	Uncharacterized protein.	Uncharacterized protein.	0.529
PNEG_01329	PNEG_01417	M7NU28	M7NSN7	Uncharacterized protein.	U-box domain-containing protein.	0.913
PNEG_01329	PNEG_01709	M7NU28	M7NS56	Uncharacterized protein.	ANK_REP_REGION domain-containing protein.	0.872
PNEG_01329	PNEG_03209	M7NU28	M7PD39	Uncharacterized protein.	Uncharacterized protein.	0.906
PNEG_01329	PNEG_03326	M7NU28	M7NN00	Uncharacterized protein.	Uncharacterized protein.	0.614
PNEG_01329	TIF6	M7NU28	M7PCK6	Uncharacterized protein.	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. Is also involved in ribosome biogenesis. Associates with pre-60S subunits in the nucleus and is involved in its nuclear export; Belongs to the eIF-6 family.	0.678
PNEG_01417	PNEG_01329	M7NSN7	M7NU28	U-box domain-containing protein.	Uncharacterized protein.	0.913
PNEG_01417	PNEG_01709	M7NSN7	M7NS56	U-box domain-containing protein.	ANK_REP_REGION domain-containing protein.	0.656
PNEG_01417	PNEG_02056	M7NSN7	M7NRZ4	U-box domain-containing protein.	Cell division control protein 48; Belongs to the AAA ATPase family.	0.977
PNEG_01417	PNEG_03048	M7NSN7	M7NN73	U-box domain-containing protein.	AAA domain-containing protein.	0.612
PNEG_01417	PNEG_03209	M7NSN7	M7PD39	U-box domain-containing protein.	Uncharacterized protein.	0.722
PNEG_01417	PNEG_03585	M7NSN7	M7NHV5	U-box domain-containing protein.	AAA domain-containing protein; Belongs to the AAA ATPase family.	0.612
PNEG_01709	PNEG_00484	M7NS56	M7PLX6	ANK_REP_REGION domain-containing protein.	zf-C2HC5 domain-containing protein.	0.739