PNEG_01553 protein (Pneumocystis murina) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

PNEG_01553

COG2 domain-containing protein. (256 aa)

Predicted Functional Partners:

PNEG_03166

0.997

PNEG_00963

0.997

PNEG_03277

0.996

PNEG_01359

0.994

PNEG_00536

0.815

PNEG_03561

0.811

PNEG_02783

0.807

PNEG_02360

0.807

PNEG_01490

0.799

PNEG_00987

0.798

Your Current Organism:

Pneumocystis murina

NCBI taxonomy Id: 1069680
Other names: P. murina B123, Pneumocystis murina B123

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PNEG_00536	PNEG_00963	M7PC94	M7NUP8	t-SNARE coiled-coil homology domain-containing protein.	Cog4 domain-containing protein.	0.824
PNEG_00536	PNEG_00987	M7PC94	M7NUR7	t-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein.	0.784
PNEG_00536	PNEG_01359	M7PC94	M7P9W1	t-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein.	0.838
PNEG_00536	PNEG_01490	M7PC94	M7NNE5	t-SNARE coiled-coil homology domain-containing protein.	Vps54 domain-containing protein.	0.739
PNEG_00536	PNEG_01553	M7PC94	M7NSQ6	t-SNARE coiled-coil homology domain-containing protein.	COG2 domain-containing protein.	0.815
PNEG_00536	PNEG_02360	M7PC94	M7P6C4	t-SNARE coiled-coil homology domain-containing protein.	t-SNARE coiled-coil homology domain-containing protein.	0.748
PNEG_00536	PNEG_02783	M7PC94	M7NK51	t-SNARE coiled-coil homology domain-containing protein.	t-SNARE coiled-coil homology domain-containing protein.	0.996
PNEG_00536	PNEG_03166	M7PC94	M7NMI0	t-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein.	0.866
PNEG_00536	PNEG_03277	M7PC94	M7NMJ9	t-SNARE coiled-coil homology domain-containing protein.	Conserved oligomeric Golgi complex subunit 6; Acts as component of the peripheral membrane COG complex that is involved in intra-Golgi protein trafficking. COG is located at the cis-Golgi, and regulates tethering of retrograde intra-Golgi vesicles and possibly a number of other membrane trafficking events.	0.846
PNEG_00536	PNEG_03561	M7PC94	M7NHS8	t-SNARE coiled-coil homology domain-containing protein.	t-SNARE coiled-coil homology domain-containing protein.	0.985
PNEG_00963	PNEG_00536	M7NUP8	M7PC94	Cog4 domain-containing protein.	t-SNARE coiled-coil homology domain-containing protein.	0.824
PNEG_00963	PNEG_00987	M7NUP8	M7NUR7	Cog4 domain-containing protein.	Uncharacterized protein.	0.821
PNEG_00963	PNEG_01359	M7NUP8	M7P9W1	Cog4 domain-containing protein.	Uncharacterized protein.	0.999
PNEG_00963	PNEG_01490	M7NUP8	M7NNE5	Cog4 domain-containing protein.	Vps54 domain-containing protein.	0.857
PNEG_00963	PNEG_01553	M7NUP8	M7NSQ6	Cog4 domain-containing protein.	COG2 domain-containing protein.	0.997
PNEG_00963	PNEG_02360	M7NUP8	M7P6C4	Cog4 domain-containing protein.	t-SNARE coiled-coil homology domain-containing protein.	0.806
PNEG_00963	PNEG_02783	M7NUP8	M7NK51	Cog4 domain-containing protein.	t-SNARE coiled-coil homology domain-containing protein.	0.844
PNEG_00963	PNEG_03166	M7NUP8	M7NMI0	Cog4 domain-containing protein.	Uncharacterized protein.	0.998
PNEG_00963	PNEG_03277	M7NUP8	M7NMJ9	Cog4 domain-containing protein.	Conserved oligomeric Golgi complex subunit 6; Acts as component of the peripheral membrane COG complex that is involved in intra-Golgi protein trafficking. COG is located at the cis-Golgi, and regulates tethering of retrograde intra-Golgi vesicles and possibly a number of other membrane trafficking events.	0.999
PNEG_00963	PNEG_03561	M7NUP8	M7NHS8	Cog4 domain-containing protein.	t-SNARE coiled-coil homology domain-containing protein.	0.894