STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PNEG_00806AD domain-containing protein. (216 aa)    
Predicted Functional Partners:
PNEG_02477
LsmAD domain-containing protein.
    
 0.995
PNEG_03276
ATP-dependent RNA helicase dhh1; Belongs to the DEAD box helicase family.
    
 
 0.913
PNEG_01673
Uncharacterized protein.
    
 
 0.868
LSM1
U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.
   
 
 0.616
PNEG_01310
PUM-HD domain-containing protein.
    
   0.586
PNEG_02829
Sm domain-containing protein.
   
 
 0.576
PNEG_03000
Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.
    
 
 0.573
LSM3
U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.
    
 
 0.556
PNEG_01926
PUM-HD domain-containing protein.
    
   0.545
PNEG_01655
Sm domain-containing protein.
    
 
 0.535
Your Current Organism:
Pneumocystis murina
NCBI taxonomy Id: 1069680
Other names: P. murina B123, Pneumocystis murina B123
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