PNEG_00712 protein (Pneumocystis murina) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

PNEG_00712

SANT domain-containing protein. (338 aa)

Predicted Functional Partners:

PNEG_03554

0.998

PNEG_00724

0.998

PNEG_02430

0.979

PNEG_01810

0.977

PNEG_00275

0.975

PNEG_01934

0.963

PNEG_01931

0.962

PNEG_01373

0.962

PNEG_01631

0.962

PNEG_03302

0.958

Your Current Organism:

Pneumocystis murina

NCBI taxonomy Id: 1069680
Other names: P. murina B123, Pneumocystis murina B123

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PNEG_00275	PNEG_00712	M7PLA4	M7PB52	Uncharacterized protein.	SANT domain-containing protein.	0.975
PNEG_00275	PNEG_00724	M7PLA4	M7NQY0	Uncharacterized protein.	TATA-box-binding protein.	0.854
PNEG_00275	PNEG_01373	M7PLA4	M7P9X6	Uncharacterized protein.	RPOL4c domain-containing protein.	0.996
PNEG_00275	PNEG_01631	M7PLA4	M7PIV9	Uncharacterized protein.	Uncharacterized protein.	0.999
PNEG_00275	PNEG_01810	M7PLA4	M7NS02	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.995
PNEG_00275	PNEG_01931	M7PLA4	M7NRL0	Uncharacterized protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.995
PNEG_00275	PNEG_01934	M7PLA4	M7PH21	Uncharacterized protein.	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
PNEG_00275	PNEG_02430	M7PLA4	M7PF42	Uncharacterized protein.	DNA-directed RNA polymerase III subunit RPC6; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs; Belongs to the eukaryotic RPC34/RPC39 RNA polymerase subunit family.	0.999
PNEG_00275	PNEG_03302	M7PLA4	M7PDD9	Uncharacterized protein.	Uncharacterized protein.	0.741
PNEG_00275	PNEG_03554	M7PLA4	M7NLU9	Uncharacterized protein.	Uncharacterized protein.	0.935
PNEG_00712	PNEG_00275	M7PB52	M7PLA4	SANT domain-containing protein.	Uncharacterized protein.	0.975
PNEG_00712	PNEG_00724	M7PB52	M7NQY0	SANT domain-containing protein.	TATA-box-binding protein.	0.998
PNEG_00712	PNEG_01373	M7PB52	M7P9X6	SANT domain-containing protein.	RPOL4c domain-containing protein.	0.962
PNEG_00712	PNEG_01631	M7PB52	M7PIV9	SANT domain-containing protein.	Uncharacterized protein.	0.962
PNEG_00712	PNEG_01810	M7PB52	M7NS02	SANT domain-containing protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.977
PNEG_00712	PNEG_01931	M7PB52	M7NRL0	SANT domain-containing protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.962
PNEG_00712	PNEG_01934	M7PB52	M7PH21	SANT domain-containing protein.	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.963
PNEG_00712	PNEG_02430	M7PB52	M7PF42	SANT domain-containing protein.	DNA-directed RNA polymerase III subunit RPC6; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs; Belongs to the eukaryotic RPC34/RPC39 RNA polymerase subunit family.	0.979
PNEG_00712	PNEG_03302	M7PB52	M7PDD9	SANT domain-containing protein.	Uncharacterized protein.	0.958
PNEG_00712	PNEG_03554	M7PB52	M7NLU9	SANT domain-containing protein.	Uncharacterized protein.	0.998