STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PNEG_00666DNA repair helicase rad15. (778 aa)    
Predicted Functional Partners:
PNEG_02642
3'-5' exonuclease domain-containing protein.
  
 0.999
PNEG_00752
Uncharacterized protein.
    
 0.999
PNEG_03002
Uncharacterized protein.
    
 0.999
PNEG_01925
General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.
    
 0.999
PNEG_01530
Uncharacterized protein.
   
 0.999
PNEG_02304
CDK-activating kinase assembly factor MAT1.
    
 0.998
PNEG_00333
RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.
    
 0.998
PNEG_04316
CYCLIN domain-containing protein; Belongs to the cyclin family.
    
 0.993
PNEG_01711
TFIIE beta domain-containing protein.
    
 0.991
PNEG_00199
HTH TFE/IIEalpha-type domain-containing protein.
    
 0.991
Your Current Organism:
Pneumocystis murina
NCBI taxonomy Id: 1069680
Other names: P. murina B123, Pneumocystis murina B123
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.