STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
USB1U6 snRNA phosphodiesterase; Phosphodiesterase responsible for the U6 snRNA 3' end processing. Acts as an exoribonuclease (RNase) responsible for trimming the poly(U) tract of the last nucleotides in the pre-U6 snRNA molecule, leading to the formation of mature U6 snRNA; Belongs to the 2H phosphoesterase superfamily. USB1 family. (254 aa)    
Predicted Functional Partners:
PNEG_01576
Uncharacterized protein.
    
   0.884
PNEG_02209
Suf domain-containing protein.
    
 
 0.637
PNEG_02076
WD_REPEATS_REGION domain-containing protein.
    
   0.599
PNEG_02751
Uncharacterized protein.
    
   0.583
PNEG_01520
SKIP_SNW domain-containing protein.
    
 
 0.578
PNEG_01034
Uncharacterized protein.
    
 
 0.566
PNEG_02245
G-patch domain-containing protein.
    
   0.549
PNEG_00531
RRM domain-containing protein.
    
   0.548
PNEG_01845
Uncharacterized protein.
    
   0.546
PNEG_02117
Uncharacterized protein.
    
   0.545
Your Current Organism:
Pneumocystis murina
NCBI taxonomy Id: 1069680
Other names: P. murina B123, Pneumocystis murina B123
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.