STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCD28733.1Putative thioredoxin domain; Evidence 3:Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type c:carrier. (125 aa)    
Predicted Functional Partners:
lpd
Lipoamide dehydrogenase, E3 component; Evidence 2a:Function of homologous gene experimentally demonstrated in an other organism; Product type e:enzyme.
  
 
 0.852
CCD30088.1
Porin Gram-negative type precursor; Evidence 2b:Function of strongly homologous gene; Product type pt:putative transporter.
  
 
   0.805
tufA
Elongation factor G (EF-G); Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily.
    
 
 0.788
nrdA
Ribonucleoside-diphosphate reductase alpha subunit (Ribonucleotide reductase); Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and/or for immediate growth after restoration of oxygen.
  
 0.782
DprA
Putative DNA protecting protein DprA; Evidence 3:Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type cp:cell process.
  
    0.769
CCD29154.1
Putative membrane protein; Evidence 3:Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pm:putative membrane component.
  
     0.760
CCD30067.1
Sensor protein; Evidence 2b:Function of strongly homologous gene; Product type e:enzyme.
  
 0.748
CCD30317.1
Conserved hypothetical protein; Evidence 4:Homologs of previously reported genes of unknown function.
  
     0.748
CCD28877.1
Transglycosylase, SLT family; Evidence 2b:Function of strongly homologous gene; Product type e:enzyme.
  
     0.745
priB
Primosomal replication protein N; Binds single-stranded DNA at the primosome assembly site (PAS); Belongs to the PriB family.
  
     0.740
Your Current Organism:
Glomeribacter gigasporarum
NCBI taxonomy Id: 1070319
Other names: C. Glomeribacter gigasporarum BEG34, Candidatus Glomeribacter gigasporarum BEG34, Candidatus Glomeribacter gigasporarum str. BEG34, Candidatus Glomeribacter gigasporarum strain BEG34
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