STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
traTTraT-like type IV secretion system protein (IcmJ/DotN protein); Evidence 2b:Function of strongly homologous gene; Product type ps:putative structure. (227 aa)    
Predicted Functional Partners:
CCD30244.1
Putative conjugal transfer TrbA-like protein; Evidence 3:Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pe:putative enzyme.
   
 
 0.893
G2J779_9BURK
Fragment of Putative Filamentation induced by cAMP protein Fic; Evidence 3:Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pe:putative enzyme.
   
 
 0.891
traU
TraU like type IV secretion system protein (IcmB-protein); Evidence 2b:Function of strongly homologous gene; Product type ps:putative structure.
       0.789
CCD28951.1
Exported hypothetical protein; Evidence 5:No homology to any previously reported sequences.
       0.768
CCD28952.1
Conserved hypothetical protein; Evidence 4:Homologs of previously reported genes of unknown function.
       0.768
traG
TRAG family protein; Evidence 3:Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pt:putative transporter.
   
 
 0.730
traD
Type IV conjugative transfer system protein TraD; Evidence 2b:Function of strongly homologous gene; Product type cp:cell process.
   
 
 0.730
CCD28949.1
Conserved hypothetical protein; Evidence 4:Homologs of previously reported genes of unknown function.
       0.696
traQ
TraQ-like type IV secretion system protein (IcmC/DotN protein)like protein; Evidence 2b:Function of strongly homologous gene; Product type pf:putative factor.
       0.467
CCD28954.1
Membrane hypothetical protein; Evidence 4:Homologs of previously reported genes of unknown function.
       0.426
Your Current Organism:
Glomeribacter gigasporarum
NCBI taxonomy Id: 1070319
Other names: C. Glomeribacter gigasporarum BEG34, Candidatus Glomeribacter gigasporarum BEG34, Candidatus Glomeribacter gigasporarum str. BEG34, Candidatus Glomeribacter gigasporarum strain BEG34
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