STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCD29005.1Putative conjugal transfer protein trbL; Evidence 3:Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pm:putative membrane component. (389 aa)    
Predicted Functional Partners:
TrbF
Putative Conjugal transfer protein TrbF; Evidence 3:Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pcp:putative cell process.
 
  
 0.981
CCD29003.1
P-type conjugative transfer protein TrbG (fragment); Evidence 2a:Function of homologous gene experimentally demonstrated in an other organism; Product type cp:cell process.
 
  
 0.973
trbE
Conjugal transfer protein trbE precursor; Evidence 3:Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pcp:putative cell process.
 
  
 0.955
trbB
Putative conjugal transfer protein trbB; Evidence 2a:Function of homologous gene experimentally demonstrated in an other organism; Product type e:enzyme.
 
  
 0.942
CCD29254.1
Putative conjugal transfer protein trbI (fragment); Evidence 3:Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pt:putative transporter.
 
  
 0.928
CCD29006.1
Putative P-type conjugative transfer protein TrbJ; Evidence 3:Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pf:putative factor.
    
 0.926
traG
TRAG family protein; Evidence 3:Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pt:putative transporter.
 
   
 0.800
CCD29008.1
Putative conjugal transfer protein trbD; Evidence 3:Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pm:putative membrane component.
    
 0.795
TrbC
Putative conjugal transfer protein TrbC; Evidence 3:Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pm:putative membrane component.
    
 0.772
MobA
Putative relaxase/mobilization nuclease family protein MobA; Evidence 3:Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type e:enzyme.
  
     0.623
Your Current Organism:
Glomeribacter gigasporarum
NCBI taxonomy Id: 1070319
Other names: C. Glomeribacter gigasporarum BEG34, Candidatus Glomeribacter gigasporarum BEG34, Candidatus Glomeribacter gigasporarum str. BEG34, Candidatus Glomeribacter gigasporarum strain BEG34
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