Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| CCD29029.1 | ihfA | CAGGBEG34_200028 | CAGGBEG34_200027 | Transcriptional regulator, MerR family; Evidence 2b:Function of strongly homologous gene; Product type r:regulator. | Integration host factor subunit alpha (IHF-alpha) (modular protein); This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family. | 0.934 |
| CCD29029.1 | pheT | CAGGBEG34_200028 | CAGGBEG34_200026 | Transcriptional regulator, MerR family; Evidence 2b:Function of strongly homologous gene; Product type r:regulator. | Phenylalanyl-tRNA synthetase beta chain (Phenylalanine--tRNA ligase beta chain) (PheRS); Evidence 2a:Function of homologous gene experimentally demonstrated in an other organism; Product type e:enzyme; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily. | 0.791 |
| CCD29029.1 | rplT | CAGGBEG34_200028 | CAGGBEG34_200024 | Transcriptional regulator, MerR family; Evidence 2b:Function of strongly homologous gene; Product type r:regulator. | 50S ribosomal subunit protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.514 |
| CCD29029.1 | rpmI | CAGGBEG34_200028 | CAGGBEG34_200023 | Transcriptional regulator, MerR family; Evidence 2b:Function of strongly homologous gene; Product type r:regulator. | 50S ribosomal protein L35; Evidence 2a:Function of homologous gene experimentally demonstrated in an other organism; Product type s:structure; Belongs to the bacterial ribosomal protein bL35 family. | 0.498 |
| CCD29029.1 | trmE | CAGGBEG34_200028 | CAGGBEG34_200029 | Transcriptional regulator, MerR family; Evidence 2b:Function of strongly homologous gene; Product type r:regulator. | tRNA modification GTPase TrmE; Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family. | 0.682 |
| CCD29655.1 | ihfA | CAGGBEG34_270070 | CAGGBEG34_200027 | Putative uncharacterized protein DUF710; Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division. | Integration host factor subunit alpha (IHF-alpha) (modular protein); This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family. | 0.586 |
| acpP | hfq | CAGGBEG34_20026 | CAGGBEG34_280041 | Acyl carrier protein (ACP); Carrier of the growing fatty acid chain in fatty acid biosynthesis. | Protein Hfq; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family. | 0.477 |
| acpP | ihfA | CAGGBEG34_20026 | CAGGBEG34_200027 | Acyl carrier protein (ACP); Carrier of the growing fatty acid chain in fatty acid biosynthesis. | Integration host factor subunit alpha (IHF-alpha) (modular protein); This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family. | 0.652 |
| acpP | rplT | CAGGBEG34_20026 | CAGGBEG34_200024 | Acyl carrier protein (ACP); Carrier of the growing fatty acid chain in fatty acid biosynthesis. | 50S ribosomal subunit protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.837 |
| acpP | rpmI | CAGGBEG34_20026 | CAGGBEG34_200023 | Acyl carrier protein (ACP); Carrier of the growing fatty acid chain in fatty acid biosynthesis. | 50S ribosomal protein L35; Evidence 2a:Function of homologous gene experimentally demonstrated in an other organism; Product type s:structure; Belongs to the bacterial ribosomal protein bL35 family. | 0.456 |
| acpP | trmE | CAGGBEG34_20026 | CAGGBEG34_200029 | Acyl carrier protein (ACP); Carrier of the growing fatty acid chain in fatty acid biosynthesis. | tRNA modification GTPase TrmE; Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family. | 0.804 |
| hfq | acpP | CAGGBEG34_280041 | CAGGBEG34_20026 | Protein Hfq; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family. | Acyl carrier protein (ACP); Carrier of the growing fatty acid chain in fatty acid biosynthesis. | 0.477 |
| hfq | ihfA | CAGGBEG34_280041 | CAGGBEG34_200027 | Protein Hfq; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family. | Integration host factor subunit alpha (IHF-alpha) (modular protein); This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family. | 0.734 |
| hupB | ihfA | CAGGBEG34_220045 | CAGGBEG34_200027 | Histone family protein DNA-binding protein HU-beta (NS1) (HU-1); Evidence 2a:Function of homologous gene experimentally demonstrated in an other organism; Product type r:regulator; Belongs to the bacterial histone-like protein family. | Integration host factor subunit alpha (IHF-alpha) (modular protein); This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family. | 0.625 |
| ihfA | CCD29029.1 | CAGGBEG34_200027 | CAGGBEG34_200028 | Integration host factor subunit alpha (IHF-alpha) (modular protein); This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family. | Transcriptional regulator, MerR family; Evidence 2b:Function of strongly homologous gene; Product type r:regulator. | 0.934 |
| ihfA | CCD29655.1 | CAGGBEG34_200027 | CAGGBEG34_270070 | Integration host factor subunit alpha (IHF-alpha) (modular protein); This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family. | Putative uncharacterized protein DUF710; Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division. | 0.586 |
| ihfA | acpP | CAGGBEG34_200027 | CAGGBEG34_20026 | Integration host factor subunit alpha (IHF-alpha) (modular protein); This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family. | Acyl carrier protein (ACP); Carrier of the growing fatty acid chain in fatty acid biosynthesis. | 0.652 |
| ihfA | hfq | CAGGBEG34_200027 | CAGGBEG34_280041 | Integration host factor subunit alpha (IHF-alpha) (modular protein); This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family. | Protein Hfq; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family. | 0.734 |
| ihfA | hupB | CAGGBEG34_200027 | CAGGBEG34_220045 | Integration host factor subunit alpha (IHF-alpha) (modular protein); This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family. | Histone family protein DNA-binding protein HU-beta (NS1) (HU-1); Evidence 2a:Function of homologous gene experimentally demonstrated in an other organism; Product type r:regulator; Belongs to the bacterial histone-like protein family. | 0.625 |
| ihfA | ihfB | CAGGBEG34_200027 | CAGGBEG34_430008 | Integration host factor subunit alpha (IHF-alpha) (modular protein); This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family. | Integration host factor subunit beta (IHF-beta); Evidence 2a:Function of homologous gene experimentally demonstrated in an other organism; Product type f:factor; Belongs to the bacterial histone-like protein family. | 0.995 |
page 1 of 3