STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fprferredoxin--NADP+ reductase; Evidence 2a:Function of homologous gene experimentally demonstrated in an other organism; Product type e:enzyme. (256 aa)    
Predicted Functional Partners:
sdhA
Hypothetical protein, TPR repeat-containing protein; Contig1598-1692; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily.
     
 0.662
fabG
3-oxoacyl-(acyl-carrier-protein) reductase; Catalyzes the NADPH-dependent reduction of beta-ketoacyl-ACP substrates to beta-hydroxyacyl-ACP products, the first reductive step in the elongation cycle of fatty acid biosynthesis. Belongs to the short-chain dehydrogenases/reductases (SDR) family.
     
 0.657
CCD29059.1
Rieske (2Fe-2S) domain protein; Evidence 2b:Function of strongly homologous gene; Product type e:enzyme.
    
  0.651
CCD29302.1
Putative phenylacetic acid degradation thioesterase; Evidence 3:Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pe:putative enzyme.
  
 
  0.651
alaS
Alanyl-tRNA synthetase (Alanine--tRNA ligase) (AlaRS); Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
       0.642
fdx
(2Fe-2S) ferredoxin; Evidence 2a:Function of homologous gene experimentally demonstrated in an other organism; Product type c:carrier.
  
 
 0.634
msrA
Peptide methionine sulfoxide reductase MsrA (Protein-methionine-S-oxide reductase); Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
  
  
 0.621
nrdB
Fragment of putative histone H1 protein; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides; Belongs to the ribonucleoside diphosphate reductase small chain family.
    
  0.619
CCD28878.1
NADP-dependent malic enzyme (Nadp-me); Evidence 2a:Function of homologous gene experimentally demonstrated in an other organism; Product type e:enzyme.
      
 0.572
CCD29778.1
Conserved hypothetical protein; Evidence 4:Homologs of previously reported genes of unknown function.
       0.570
Your Current Organism:
Glomeribacter gigasporarum
NCBI taxonomy Id: 1070319
Other names: C. Glomeribacter gigasporarum BEG34, Candidatus Glomeribacter gigasporarum BEG34, Candidatus Glomeribacter gigasporarum str. BEG34, Candidatus Glomeribacter gigasporarum strain BEG34
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